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Manuscript Title: Eucb: a C++ program for molecular dynamics trajectory analysis
Authors: Ioannis G. Tsoulos, Athanassios Stavrakoudis
Program title: Eucb
Catalogue identifier: AEIC_v1_0
Distribution format: tar.gz
Journal reference: Comput. Phys. Commun. 182(2011)834
Programming language: GNU-C++.
Computer: The tool is designed and tested on GNU/Linux systems.
Operating system: Unix/Linux systems.
RAM: 2MB
Supplementary material: Sample data files are available here.
Keywords: Conformational analysis, Molecular dynamics, Protein structure, Trajectory analysis.
PACS: 2.70.Ns, 31.15.at, 36.20.Ey.
Classification: 3.

Nature of problem:
Analysis of molecular dynamics trajectories.

Solution method:
The program finds all possible interactions according to input files and the user instructions. Then it reads all the trajectory frames and finds those frames in which these interactions occurr, under certain geometrical criteria. This is a blind search, without a priori knowledge if a certain interaction occurs or not.
The program exports time series of these quantities (distance, angles, etc.) and appropriate descriptive statistics.

Running time:
Depends on the input data and the required options