Programs in Physics & Physical Chemistry
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Programs in Physics & Physical Chemistry |
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| Index | Classification |
| 3 | Biology and Molecular Biology |
| AABU_v1_0 | POETA Determination of proteinic structures: an experimentation program. B. Coghlan, S. Fraga Comput. Phys. Commun. 36(1985)391 |
| AABU_v1_0 | 0001 AGAB Association of proteins: adaptation and coupling of two available programs. L. Seijo, B. Coghlan, S. Fraga Comput. Phys. Commun. 41(1986)169 |
| ABZD_v1_0 | SIMLYS SIMLYS: a software package for trajectory analysis of molecular dynamics simulations. P. Kruger, M. Luke, A. Szameit Comput. Phys. Commun. 62(1991)371 |
| ABZD_v2_0 | SIMLYS 2.0 SIMLYS version 2.0: A software package for trajectory analysis of molecular dynamics simulations. P. Kruger, A. Szameit Comput. Phys. Commun. 72(1992)265 |
| ABZE_v1_0 | PLEC PLEC: a program for building, modelling and optimizing polypeptide structures. M.L. Forcada Comput. Phys. Commun. 64(1991)131 |
| ACBG_v1_0 | AMYRVF Pair potential calculation of molecular associations: a vectorized version. F. Torrens, E. Orti, J. Sanchez-Marin Comput. Phys. Commun. 66(1991)341 |
| ACEO_v1_0 | AMYR Molecular associations. S. Fraga Comput. Phys. Commun. 29(1983)351 |
| ACEO_v1_0 | 0001 AGAB Association of proteins: adaptation and coupling of two available programs. L. Seijo, B. Coghlan, S. Fraga Comput. Phys. Commun. 41(1986)169 |
| ACFH_v1_0 | DIAD Determination of antigenic determinants. S. Fraga Comput. Phys. Commun. 30(1983)325 |
| ADIT_v1_0 | bics Solutions of Poisson's equation in channel-like geometries. M. Hoyles, S. Kuyucak, S.-H. Chung Comput. Phys. Commun. 115(1998)45 |
| ADIW_v1_0 | AMYR 2 AMYR 2: a new version of a computer program for pair potential calculation of molecular associations. F. Torrens, M. Rubio, J. Sanchez-Marin Comput. Phys. Commun. 115(1998)87 |
| ADNW_v1_0 | CA3D CA3D: a Monte Carlo code to simulate 3D buffered diffusion of ions in sub-membrane domains. A. Gil, J. Segura Comput. Phys. Commun. 136(2001)269 |
| ADOJ_v1_0 | SMMP [SMMP] a modern package for simulation of proteins. F. Eisenmenger, U.H.E. Hansmann, S. Hayryan, C.-K. Hu Comput. Phys. Commun. 138(2001)192 |
| ADOJ_v2_0 | SMMP An Enhanced Version of SMMP - Open-Source Software Package for Simulation of Proteins Frank Eisenmenger, Ulrich H.E. Hansmann, Shura Hayryan, Chin-Kun Hu Comput. Phys. Commun. 174(2006)422 |
| ADOJ_v3_0 | SMMP SMMP v. 3.0 - Simulating proteins and protein interactions in Python and Fortran Jan H. Meinke, Sandipan Mohanty, Frank Eisenmenger, Ulrich H.E. Hansmann Comput. Phys. Commun. 178(2008)459 |
| ADTU_v1_0 | FRETsg FRETsg: biomolecular structure model building from multiple FRET experiments. G.F. Schroder, H. Grubmuller Comput. Phys. Commun. 158(2004)150 |
| ADTV_v1_0 | tweezercalib MatLab program for precision calibration of optical tweezers. I.M. Tolic-Norrelykke, K. Berg-Sorensen, H. Flyvbjerg Comput. Phys. Commun. 159(2004)225 |
| ADTV_v2_0 | tweezercalib tweezercalib 2.0: Faster version of MatLab package for precise calibration of optical tweezers Poul Martin Hansen, Iva Marija Tolic-Nørrelykke, Henrik Flyvbjerg, Kirstine Berg-Sørensen Comput. Phys. Commun. 174(2006)518 |
| ADTV_v2_1 | tweezercalib tweezercalib 2.1: Faster version of MatLab package for precise calibration of optical tweezers Poul Martin Hansen, Iva Marija Tolic-Nørrelykke, Henrik Flyvbjerg, Kirstine Berg-Sørensen Comput. Phys. Commun. 175(2006)572 |
| ADUL_v1_0 | ARVO ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations Ján Busa, Jozef Dzurina, Edik Hayryan, Shura Hayryan, Chin-Kun Hu, Ján Plavka, Imrich Pokorný, Jaroslav Skrivánek, Ming-Chya Wu Comput. Phys. Commun. 165(2005)59 |
| ADUL_v2_0 | ARVO-CL ARVO-CL: The OpenCL Version of the ARVO Package - An Efficient Tool for Computing the Accessible Surface Area and the Excluded Volume of Proteins via Analytical Equations Ján Buša Jr., Shura Hayryan, Ming-Chya Wu, Ján Buša, Chin-Kun Hu Comput. Phys. Commun. 183(2012)2494 |
| ADXG_v1_0 | HAWGC - histogram analysis with grayscale conversion Quantitative histogram analysis of images Oliver Holub, Sérgio T. Ferreira Comput. Phys. Commun. 175(2006)620 |
| ADZU_v1_0 | MonteCarloMaplet A Monte-Carlo Maplet for the Study of the Optical Properties of Biological Tissues Man Ho Yip, M. J. Carvalho Comput. Phys. Commun. 177(2007)965 |
| AEBY_v1_0 | MDVRY MDVRY: a polarizable classical molecular dynamics package for biomolecules M. Souaille, H. Loirat, D. Borgis, M.P. Gaigeot Comput. Phys. Commun. 180(2009)276 |
| AECJ_v1_0 | g-permute g-permute: Permutation-reduced Phase Space Density Compaction F. Reinhard, O.F. Lange, J.S. Hub, J. Haas, H. Grubmüller Comput. Phys. Commun. 180(2009)455 |
| AEDA_v1_0 | REACH REACH: A Program for Coarse-Grained Biomolecular Simulation Kei Moritsugua, Jeremy C. Smith Comput. Phys. Commun. 180(2009)1188 |
| AEFD_v1_0 | Chaste Chaste: a test-driven approach to software development for biological modelling Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip Murray, James M. Osborne, Alex Walter, S. Jon Chapman, Alan Garny, Inge M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David J. Gavaghan Comput. Phys. Commun. 180(2009)2452 |
| AEGB_v1_0 | AFMPB: Adaptive Fast Multipole Poisson-Boltzmann Solver AFMPB: An Adaptive Fast Multipole Poisson-Boltzmann Solver for Calculating Electrostatics in Biomolecular Systems Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, J. Andrew McCammon Comput. Phys. Commun. 181(2010)1150 |
| AEGI_v1_0 | NWChem NWChem: a comprehensive and scalable open-source solution for large scale molecular simulations M. Valiev, E.J. Bylaska, N. Govind, K. Kowalski, T.P. Straatsma, H.J.J. Van Dam, D. Wang, J. Nieplocha, E. Apra, T.L. Windus, W.A. de Jong Comput. Phys. Commun. 181(2010)1477 |
| AEGR_v1_0 | TweezPal TweezPal - Optical tweezers analysis and calibration software Natan Osterman Comput. Phys. Commun. 181(2010)1911 |
| AEGT_v1_0 | Browndye Browndye: A Software Package for Brownian Dynamics Gary A. Huber, J. Andrew McCammon Comput. Phys. Commun. 181(2010)1896 |
| AEHH_v1_0 | TNAMD TNAMD: Implementation of TIGER2 in NAMD William J. Menz, Matthew J. Penna, Mark J. Biggs Comput. Phys. Commun. 181(2010)2082 |
| AEHT_v1_0 | TimeSeriesStreaming.VI TimeSeriesStreaming.VI: LabVIEW program for reliable data streaming of large analog time series Fabian Czerwinski, Lene B. Oddershede Comput. Phys. Commun. 182(2011)485 |
| AEIC_v1_0 | Eucb Eucb: a C++ program for molecular dynamics trajectory analysis Ioannis G. Tsoulos, Athanassios Stavrakoudis Comput. Phys. Commun. 182(2011)834 |
| AEJW_v1_0 | AESS AESS: Accelerated Exact Stochastic Simulation David D. Jenkins, Gregory D. Peterson Comput. Phys. Commun. 182(2011)2580 |
| AEJY_v1_0 | raft C-library raft: reconstruction algorithms for tomography. Applications to X-ray Fluorescence Tomography Eduardo X. Miqueles, Alvaro R. De Pierro Comput. Phys. Commun. 182(2011)2661 |
| AEKL_v1_0 | SASSIE SASSIE: A program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints Joseph E. Curtis, Sindhu Raghunandan, Hirsh Nanda, Susan Krueger Comput. Phys. Commun. 183(2012)382 |
| AEMP_v1_0 | CASS CASS - CFEL-ASG Software Suite Lutz Foucar, Anton Barty, Nicola Coppola, Robert Hartmann, Peter Holl, Uwe Hoppe, Stephan Kassemeyer, Nils Kimmel, Jochen Küpper, Mirko Scholz, Simone Techert, Thomas A. White, Lothar Strüder, Joachim Ullrich Comput. Phys. Commun. 183(2012)2207 |
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